dnalinux/repeatmasker repository overview

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by the program cross_match, an efficient implementation of the Smith-Waterman-Gotoh algorithm developed by Phil Green.

Source: https://www.repeatmasker.org/webrepeatmaskerhelp.html⁠

Binaries:

/usr/local/trf409.linux64

/usr/local/rmblast-2.14.1/bin

/usr/local/RepeatMasker