DNALinux

Convert bedGraph to bigWig file

A Python library for reading and writing bigWig files

Biopython is a set of freely available tools for biological computation written in Python

Python precompiled with no-GIL (aka free-threading)

Platform for comparative genomics

A tool for rapid assessment of genome bin quality using machine learning

Finds regions of similarity between nucleotide or protein sequences.

R environment for scRNA-seq workflow with Seurat, Matrix, igraph, and bnlearn

Suite of programs for interacting with high-throughput sequencing data. Home: https://www.htslib.org

Ultrafast, memory-efficient and highly accurate pair-end read merger

the antibiotics and Secondary Metabolite Analysis SHell

De novo assembler for single-cell, isolate, RNA, plasmid genomes and metagenomes

All in one FASTQ preprocessor

Conduct quality control of raw sequence data

The SRA Toolkit and SDK from NCBI is a collection of tools for using data in the INSDC SRA

The tool bwa-mem2 is the next version of the bwa-mem algorithm in bwa.

Sequence alignment program that aligns DNA or mRNA sequences against a large reference database.

Mapping low-divergent sequences against a larger reference genome

Design PCR primers from DNA sequence.

Screening DNA sequences for interspersed repeats and low complexity sequences