gnasello/microct-env repository overview

⁠Standard use

Run the following command (might need sudo priviledges):

docker run -it --rm  \
                -p 8888:8888 -p49053:49053 \
                --volume $HOME:/home/sliceruser/work \
                --user root \
                gnasello/microct-env:latest

You will create new files and directories as root. Thus, if you want to allow any further user to access everything you created in the current directory, type the following command:

chmod -R 777 ./ 

⁠List of packages

Docker container built on slicer/slicer-notebook⁠

Slicer extensions added to lassoan/slicer-notebook:2021-10-15-b3077c2 :

- SlicerDcm2nii,
- Sandbox,
- RawImageGuess,
- SurfaceWrapSolidify,
- MarkupsToModel,
- SegmentEditorExtraEffects,
- SlicerIGT,
- Auto3dgm,
- SlicerMorph

⁠Dockerfile

You find instructions to build this Docker Image in this GitHub page⁠.