gnasello

Docker image for the slicer environment in a jupyter container with remote desktop

Docker Image for Image Analysis

Docker Image for flow cytometry data analysis in RStudio

Docker Image for HLA typing from RNA-seq data

Docker Image for Ollama from JupyterLab

Docker Image for Robust Speech Recognition with OpenAI - Whisper

Docker image for 3D Slicer software

Docker Image for Firefox in Ubuntu

Docker Image for image analysis in QuPath (with GUI)

Docker Image for image analysis in Fiji (with GUI)

Docker Image for scRNA-seq data analysis in Python - GPU enabled

Docker Image for scRNA-seq data analysis in R

Docker Image for basic data science - GPU enabled

Docker Image for Napari combined with Jupyter Lab

Docker Image for scRNA-seq data analysis with Python

Docker Image for ParaView application from web broswer

Conda virtual environments with R and Python packages for scRNA-seq data analysis and JupyterLab

Docker Image for the analysis of BOSE compression tests

Docker Image to build jupyter books

Docker Image for processing 3D biomedical images

Set of Python and R packages required for the scIB project [Luecken et al 2021, Nat Met]