This image implements:
and the Dockerfiles can be found on github.
Test analysis from section 2.4.1 Simple FASTA parsing example.
Get test data:
mkdir -p data
cd data
# Download test data
wget -nv https://raw.githubusercontent.com/biopython/biopython/master/Doc/examples/ls_orchid.fasta
Analyze test data with Biopython:
python
>>> from Bio import SeqIO
>>> for seq_record in SeqIO.parse("ls_orchid.fasta", "fasta"):
... print(seq_record.id)
... print(repr(seq_record.seq))
... print(len(seq_record))
...
Content type
Image
Digest
sha256:77a50d5d9…
Size
367.4 MB
Last updated
almost 4 years ago
docker pull gregorysprenger/biopython:1.68