gregorysprenger

Pandas docker container with an emphasis on Excel file reading/writing.

Kraken taxonomic sequence classifier with 4gb/8gb minikraken database.

Kraken 2 taxonomic sequence classifier with 8gb Standard database.

NCBI BLAST+ (may contain Python and databases that will need to be exported when running)

Image with Prefect and NCBI's edirect.

SPAdes assembler - pulled from GitHub and built from source

Docker containers for SKESA assembler.

Docker container containing Diamond aligner, python, and biopython.

Docker container that contains: NCBI Blast+, Python, and Biopython