Docker container containing Diamond aligner, python, and biopython.
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This image implements:
and the Dockerfiles can be found on github.
Get test data:
mkdir -p data
cd data
# Download test data
wget -nv https://raw.githubusercontent.com/nf-core/test-datasets/7639b3c2f9f8f5ef153598e09bb98b7aabcaea2c/general/fasta/msa/BBA0001.tfa -O query.fasta
wget -nv https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/proteomics/database/yeast_UPS.fasta -O reference.fasta
Create database from reference data:
diamond makedb \
--in reference.fasta \
--db reference
Run diamond to compare query to reference:
diamond blastp \
--db reference \
--query query.fasta \
--out diamond.tsv
Content type
Image
Digest
sha256:89803baa3…
Size
396.1 MB
Last updated
over 3 years ago
docker pull gregorysprenger/diamond-biopython:2.0.13-py2-1.68