gregorysprenger/kmc repository overview

# Download test data
wget -nv --no-check-certificate \
  https://github.com/nf-core/test-datasets/raw/mag/test_data/test_minigut_R1.fastq.gz

# Create tmp output dir
mkdir -p kmc-tmp-dir

# Run KMC
kmc \
    test_minigut_R1.fastq.gz \
    kmc-output \
    kmc-tmp-dir \
    1> stdout.log \
    2> stderr.log