jimmlucas/wgs repository overview

This Docker container includes all the necessary tools for bacterial analysis using Oxford Nanopore Technologies (ONT) data (excluding MEDAKA). It provides an environment pre-configured with tools essential for bacterial genomic analysis and integrates seamlessly with other containers built for antimicrobial resistance (AMR) profiling.

The AMR analysis is performed by cross-referencing various databases to ensure comprehensive detection of resistance genes and mutations. This container is designed to streamline bacterial analysis workflows by connecting efficiently with other AMR analysis containers and resources.

More information about the process and the pipeline in this repository: ONT BACTERIAL ANALYSIS⁠