Jimm Lucas

ML API for Nanopore polishing decisions. Optimizes assembly by predicting optimal polishing rounds.

AGAT (Another Gff Analysis Toolkit)

ABRicate for AMR gene screening with bundled dependencies for genomic FASTA files.

ARIBA with PubMLST DB fix and bundled bioinformatics dependencies.

SNPEff

BAKTA tools

ONT- Tools for Bacterial Analysis

WGS Tools for Short-Read Bacterial Analysis