jysgro/pdbminer repository overview

PDBMiner: a tool that searches the PDB and the AF2 database to aid in choosing the best available structure for a given protein to be used for studies/analyses.

It's a tool that, given the information about a protein, queries the PDB, fetches all available structures of the protein, evaluates them using quality metrics that go beyond the resolution but also considers indices like R-factors, sequence coverage, missing residues, etc.

PDBminer also checks for mutations (of interest) in the structures.

The minimum input is just a UniProt ID, and it provides a detailed information about all available structures, ranked based on quality metrics.

PDBminer also provides two additional tools, PDBminer2coverage and PDBminer2network, for the visualization of the data.

Paper -> https://pubs.acs.org/doi/10.1021/acs.jcim.3c00884⁠

GitHub -> https://github.com/ELELAB/PDBminer⁠

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INFO FROM: https://www.linkedin.com/posts/abeeb-a-yekeen_pdbminer-to-find-and-annotate-protein-structures-activity-7155861804772921347-gyMV