jysgro

Protein 3D prediction based only on amino acid sequence.

based on openeuler/namd version 3.0.1 updated to 3.0.2

"reseek" protein structure search and alignment algorithm within Ubuntu 22:04

samstat 2.2.3 in Ubuntu 24.04.2 LTS

Manipulate SAM/BAM files

stringtie version 3.0.0 under Ubuntu 24.04 AND stringtie version 2.2.1 under Ubuntu 23.04

wget on Alpine 3.17

GFFCOMPARE - version 0.12.9 under Alpine 3:22

Ubuntu 24.04 with Python 3.12

Finding AA pairs for FRET.

PyMOL molecular graphics for command-line access.

CSVKIT to convert Excel files and extract from CSV

qiime2-amplicon-2024.10 in Ubuntu 20.04

YoshitakaMo's localcolabfold without using conda.

Colab version of AlphaFold 2.3.2 within a container image

version 1.5.2 of localcolabfold

Ubuntu 22.04 with Python 3.10.12 as `python3` with streamlit pandas plotly-express

Modify rbgcsail/diffdock so that it can run on HTCondor.

Implement AlleleAnalyzer v1.0.0

cwebp and dwebp command to code and decode web images in PNG or JPG

Debian container to run mycotools

Run ProteinMPNN

v1.1.0 RFdiffusion from https://github.com/RosettaCommons/RFdiffusion **with** models included

Adding non root user

tool that searches the PDB and the AlphaFold2 database