machalen/r_arrayresampling repository overview

⁠R_Arrayresampling

Dockerfile to build the R environment with R packages in order to perform resampling statistical tests:

• r-base:3.6.3
• required packages from bioconductor: "sva","Biobase","limma", "BiocGenerics","affxparser","affy", "affyPLM", "aroma.light", "gcrma", "oligo", "oligoClasses", "pdInfoBuilder", "preprocessCore", "AffymetrixDataTestFiles", "DNAcopy", "RBGL","graph", "qvalue"
• required packages from cran: "R.utils","data.table", "gtools", "gplots"