Magdalena Arnal Segura

Dockerfile to use STAR command line tool for alignment

Dockerfile to make QC for RNAseq data with fastqc

Dockerfile to use FastQ-Screen

Dockerfile to use Bowtie2

Dockerfile sourced from: https://github.com/wwylab/MuSE/blob/master/Dockerfile

Dockerfile to use BWA fo DNA-seq alignment and samtools

Set of R tools to perform the permutation analysis of p-values

Tools for genomic analysis: plink, samtools and tabix

Docker to run Vienna RNA package 2.5.0

Dockerfile with python3 installed and synapse client

Subread 2.0.2 , python3 and samtools

Dokerfile with all the required programs to run CIRI2 pipeline in RNAseq to detect circRNA

Dockerfile to run Ubuntu with java11 Based on the dockerhub repo: adoptopenjdk/openjdk11

r packages required to perform machine learning methods in r

r environment with packages from bioconductor and CRAN

Dockerfile to use deeptools in the cluster

Dockerfile in order to implement snpeff

dockerfile to run vcfR packages in R

Dockerfile to use rseqc

Dockerfile to use BWA command line tools for NGS genomic alignment

Dockerfile to use minimap2

Dockerfile to use DEXSeq with R 3.4.0

Dockerfile to use JunctionSeq with R 3.4.0

Dockerfile to use Sailfish for RNA-seq transcript quantification

Dockerfile to build a container with RSEM

Dockerfile with all required packages in order to make an affy normalization.

Dockerfile to build an image with mothur v.1.39.1

Install cutadapt in python3 in order to use multicore