mcfonsecalab/rmats repository overview

Dockerfile that includes rMATS, maser and rmats2sashimi to perform RNA splicing analysis.

• rMATs v4.1.2⁠ - Computational tool to detect differential alternative splicing events from RNA-Seq data
• PAIRADISE v1.0⁠ - Method for detecting allele-specific alternative splicing (ASAS) from RNA-seq data (required for paired-analysis within rMATS).
• maser v1.18.0⁠ - This package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events generated by rMATS
• rmats2sashimi v2.0.4⁠ - Utility to produce sashimiplot visualizations of rMATS outputs

To run rMATS, just call python rmats.py. Using full path: python /rmats-turbo/rmats.py
To run rmats2sashimi call rmats2sashimiplot.
Maser and PAIRADISE are already installed within the R environment.

Image latest version: 4.1.2

Last update: 10/09/2023