Instituto Medicina Molecular

A versatile pairwise aligner for genomic and spliced nucleotide sequences.

Docker image that includes MAJIQ, Voila and MOCCASIN to perform RNA splicing analysis.

rMATS toolkit to measure differential splicing as well as generation of sashimi plots.

Docker image with a set of utilities for VCF manipulation/annotation.

Image with Salmon and Kallisto RNA quantification tools.

Docker image with tools to make quality control analysis of RNA seq experiments.

Docker image with seqkit and seqtk software to work with fasta/fastq data.

Docker image with some basic tools to process raw fastc data.

Docker image with some tools that measure sequencing coverage across the genome.

Python 3.10.12 with several software heavily used in bioinformatics.

Docker image with strelka2 software.

SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.

MACS: Model-based Analysis for ChIP-Seq

bisulfite amplicon data for imprinted loci

Docker image with python 3.7.3 containing packages for scientific computing

Deeptools Software for general NGS data representation and low complexity analyses

Docker image that includes a set of utilities for high throughput sequencing processing.

Local accelerated basecalling for Nanopore data

Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

Filtering and trimming of Oxford Nanopore Sequencing data

Quality control tools for long read sequencing data.

A tool to identify full length cDNA reads.

Adapter trimmer for Oxford Nanopore reads