Docker image for RNA-Seq processes
The image is based on the docker.io/resolwebio/common image, derived from the
ubuntu-18.04 version of docker.io/resolwebio/base image.
Included bioinformatics tools:
- BBMap (v37.90)
- Cufflinks (v2.2.1)
- Cutadapt (v2.4)
- DESeq2 (v1.24.0)
- DEXSeq (v1.30.0)
- dexseq_prepare_annotation2 (v1.0.0)
- edgeR (v3.26.6)
- gotea (v0.0.4)
- genometools (1.5.9)
- igvtools (v2.3.98)
- jbrowse (v1.16.6)
- loadSubread (0.0.1)
- regtools (0.5.0)
- rnanorm (1.3.0)
- RSEM (v1.4.0)
- rtracklayer (v1.44.2)
- Salmon (1.2.1)
- STAR (v2.7.0f)
- Trimmomatic (v0.36)
- tximport (v1.12.3)
- shRNAde (v1.0)
- UMI-tools (v1.0.0)
- Trim Galore (v0.6.6)