Scanpy with (in development) helper function library installed. Unstable! and usage may change
1.5K
!! Under Development !!
local install of scanpy_helpers
git clone [email protected]:ShalekLab/scanpy_helpers.git
cd /path/to/cloned/project
conda env create -f environment.yml
source activate scanpy_helpers
pip install /path/to/cloned/project
from scanpy_helpers import utils
(scanpy_helpers) $ python -m scanpy_helpers.wrkfl.step00_filter_data
Content type
Image
Digest
Size
627.3 MB
Last updated
over 7 years ago
docker pull shaleklab/scanpy_helpers