MIT

Contains the Google Cloud SDK and the Python scripts necessary for running Alexandria pipelines

docker for custom seurat terra notebook runtime

Alexandria

Image with kb_python installed

Image with Kallisto and BusTools installed separately

image from shaleklab/seurat:3.0 with shaleklab/SCHelperFunctions library installed

Scanpy with (in development) helper function library installed. Unstable! and usage may change

Basic install of Seurat. Good for scripts and command line usage.

Basic install of scanpy with multicoreTSNE, good for scripts and command line usage.

Docker container to use Scanpy in Jupyter notebooks and Jupyter Lab

Seurat in RStudio environment with FIt-SNE and UMAP installed