sibswiss/epd repository overview

This container contains the code to run a standalone version of the EPD Eukaryotic Promoter Database⁠ website.

⁠How to run

After pulling the image with

docker pull sibswiss/epd

run the website with

docker run -p 8081:8081 -d sibswiss/epd

The website will be accessible at http://127.0.0.1:8081/

⁠How to run with mounted EPD genomes

Some functionalities require EPD genomes to be activated!

First, genomes have to be downloaded from https://epd.expasy.org/ftp/epdnew/docker_data/⁠ or https://zenodo.org/records/15706069⁠

Uncompress all of them, or only those you need, at the same place, let's say the MOUNTING directory.

Run docker with this mounting location

docker run --volume PATH_TO/MOUNTING:/mnt/genome -p 8081:8081 -d sibswiss/epd

⁠Code Source

https://github.com/sib-swiss/EPD/⁠

⁠Data Source

https://zenodo.org/records/17158167⁠

⁠More information

https://github.com/sib-swiss/EPD/tree/main/docker⁠