SIB Swiss Institute of Bioinformatics

A database of ultra-conserved non-coding elements and genomic regulatory blocks

The Eukaryotic Promoter Database (EPD) website

The ChIP-Seq tools: a resource for analyzing ChIP-seq and other types of genomic data

A genome-wide Position Weight Matrix (PWM) Scanner

Scan hamap profiles using pftools with the profiles and pftools in the same docker image

Use the hamap rules in sparql to annotate protein entries.

clinbio_rna-pipeline

pftools: A suite of tools to build and search generalized profiles (includes pftools2 and pftools3)

Software tools related to the MetaNetX project https://www.metanetx.org