Adding trinity assembler to base image from nf-core/rnaseq

broadinstitute/gtex_rnaseq

broadinstitute

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

docker container for cwl rnaseq pipeline (includes tophat2 and hisat2)

mpgagebioinformatics/encode_rnaseq_eclip

mpgagebioinformatics

Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.

container to run nf-core rnaseq pipeline in the pilm environment

biocorecrg/rnaseq2019

biocorecrg

Executables used for CRG-Biocore's RNAseq course 2019

Nextflow RNAseq example

A rnaseq pipeline

RNAseq analysis for Aedes albopictus gene expression over different life stages.

Test RNAseq workshop

Integration of RNAseq and eCLIP data from ENCODE. An example with KHSRP.

Single-cell RNAseq environment

Dockerized version of the IGS transciptomics pipeline

To be used with rnaseq analysis modules

RNAseq nextflow pipeline

Nextflow RNAseq pipeline image for debugging

RNAseq pipeline for SYSUCC

Pre-processing of RNASeq reads from the SMARTer Stranded Total RNA-Seq Kit v2 - Pico Input Mammalian

Docker repository used for rnaseq demo.

RNAseq(STAR) analysis for docker.

Rnaseq data analysis tools

build from bioconductor/bioconductor_docker:RELEASE_3_21-R-4.5.1

R-3.2.5 with packages for RNA-Seq: DESeq2, DEXSeq, HTSeq, limma

FIMM Technology Center's RNASeq data analysis pipeline docker image.

Docker image with R libraries for 10x RNA-Seq post processing QC

This is R implementation of bioniformatics case named single cell RNA-sequencing

RNAseq data analysis for transcriptome data