albicans2021

includes a comprehensive set of R packages for analyzing RNA-seq count data in RStudio server.

including FastQC, Trim_galore, STAR, STAR-Fusion, HISAT2, stringtie, samtools, RSEM

Base image: debian:stable-slim, including HISAT2 version 2.1.0

Base image is Ubuntu22.04, which installed only unzip, and stringtie-2.1.1

Base image: debian:stable-slim, including STAR 2.7.11b

Base image: debian:stable-slim, including RSEM v1.3.3

Base image is python:3.11-bookworm with cutadapt(v4.9), TrimGalore (v0.6.10), FastQC (v0.12.1).

STAR (version 2.7.11b) and STAR-Fusion (version 1.15.1)

Base image is Ubuntu22.04, which installed only unzip, python3, python-is-python3, and hisat2-2.1.0

Base image is Alpine linux which installed only java8, perl, unzip, and fastqc_v0.11.9

Base image is Alpine linux which installed only perl and prinseq-lite-0.20.4