Ash O'Farrell

SRA-toolkit and Entrez Direct

UShER plus a few extras

TBProfiler with NC_000962.3 set up as its reference genome.

CRyPTIC/IQBAL clockwork + reference genomes. More info: https://github.com/aofarrel/clockwork-wdl

Docker Hub mirror of ghcr.io/iqbal-lab-org/clockwork