avianalter

TOGA2: Successor of Tool to infer Orthologs from Genome Alignments

Docker image for https://github.com/ulee-sciscripts/scHSQ/tree/main Contains R, monocle3 and scHSQ

iRibo. (c.f. Integrative detection of genome-wide translation using iRibo, Turcan, et al 2024)

homer with working makeTagDirectory

Image for SAMap (1.0.15), cellranger, R (seurat + sceasy), gffread, & python (SAMap libs, jupyter)

comparative annotation toolkit that kinda works on test data (no plots). no support available.