knowengdev

Image for running the Genvisage tool for separating feature pair discovery

Prepare a user submitted network for KnowEnG knowledge-guided analysis

image for running feature_prioritization_pipeline, listed by creation date

This allows running KnowEnG pipelines and transformations in a docker container.

mini-pipelines for transformation of spreadsheets

Download a subnetwork from the KnowEnG Knowledge Network

Image for running geneset_characterization_pipeline

image for running Gene_Prioritization_Pipeline code

Image for running general_clustering_pipeline, listed by creation date

image for running samples_clustering_pipeline, listed by creation date

Fetch and parse source files to construct KnowEnG Knowledge Network

Maps names to entity IDs in the KnowEnG Knowledge Network

This is a base image for KnowEnG project.

Image of Jupyterhub server with full environment for all of the KnowEnG pipelines.

mage for running signature_analysis_pipeline, listed by creation date

collected notebooks for running knoweng pipelines

Image for running Phenotype_Prediction_Pipeline

Test build for geneset_characterization_pipeline