vortexing

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

Repository for Salmon quantification tool

variant calling and manipulating VCFs and BCFs

a powerful toolset for genome arithmetic

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

Java CLI tools for manipulating HTS data and formats

Tools for manipulating next-generation sequencing data

Official release repository for GATK versions 4.x

fastqc

Bioconductor Docker Images