ensemblorg/ensembl-genomio

Ensembl

Ensembl GenomIO Python library

tlcfem/vpmr

tlcfem

C++/Python implementation of the VPMR algorithm

Grading environment for python notebooks

staphb/pygenomeviz

State Public Health Bioinformatics Community

A genome visualization python package for comparative genomics

Docker for building geospatial python virtual environments on Ubuntu 20.04

Docker for building geospatial python virtual environments on Ubuntu 20.04

A docker image for running tests related to DataJoint Python.

Miniconda3

Docker Hardened Image

Anaconda's Miniconda3 — a minimal conda installer bundling Python and the conda package manager. A dev-only base layer for data-science and scientific-computing workflows that build their own conda environments.

A minimal base docker image with DataJoint Python dependencies installed.

biocontainers/nmrglue

biocontainers

nmrglue: a module for working with NMR data in Python.

reactionmechanismgenerator/rmg

MIT

Docker image of the Python version of Reaction Mechanism Generator (RMG-Py)

apluslms/grading-z3

Aalto University Dept. of Computer Science, EdTech team

Grading environment with specific Z3 version in path and python path.

datacontract/cli

datacontract

Open-source Python CLI for ODCS data contracts: lint, test data sources, export to many formats.

A docker image optimized for running a JupyterLab environment with DataJoint Python.

A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

dtcenter/metplus

NCAR/NOAA

Python scripting infrastructure for MET tools. Use tags named X.Y-latest or X.Y.Z.

mgibio/vcf_annotation_tools-cwl

McDonnell Genome Institute

Image containing the vcf-annotation-tools python package, for use in cwl workflows

deltaio/delta-docker

Delta Lake

Delta Lake docker with Python, Jupyter, PySpark, Scala Spark, Rust, and ROAPI samples included.

biocontainers/mzml2isa

biocontainers

A container image definition for the mzml2isa python tool

Open-source Python stack to analyse and report urban indicators for healthy, sustainable cities

Image with dependencies for ccl_emo tool. Used with gitlab CI. Based on clarinpl/python:2.7

proteowizard/panorama-files

ProteoWizard

Python based tools for working with files on a Panorama Server

getwilds/bedparse

Fred Hutch Data Science Lab

Container image for bedparse - Python module and CLI tool to perform operations on BED files

getwilds/scanpy

Fred Hutch Data Science Lab

Container image for the use of Scanpy library for Single-Cell analysis in Python

getwilds/scvi-tools

Fred Hutch Data Science Lab

Container image for the use of scvi-tools library for Single-Cell analysis in Python

app python 1

geopython/pycsw

geopython

pycsw is an OGC CSW server implementation written in Python

Container images focusing on Python tasks in cloud environments

🌍 Debian-based image bundled with GDAL/OGR and Python