MONJEAUD Cyril

Docker image for SEEK web application (fork with LDAP)

MaSuRCA Genome Assembler

Genome-wide Efficient Mixed Model Association tool

Accurate inference of orthologous gene groups made easy.

DiscoSnp++ - Discovering Single Nucleotide Polymorphism (SNP) - Colib'read tool

The program Flexbar preprocesses high-throughput sequencing data efficiently.

Wordpress with social plugins (buddypress, bbpress, etc.)

im_clam is a package for exact calculation of the joint site frequency spectrum.

Simka is a comparative metagenomics method dedicated to NGS datasets.

Platanus is a novel de novo sequence assembler

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

SLiM is an evolutionary simulation framework

LoRDEC - Hybrid error correction program for long PacBio reads - Colib'read tool

TakeABreak - Detect inversion breakpoints directly from raw NGS reads - Colib'read tool

VSEARCH including searching, clustering, chimera detection, [ ...] and shuffling of sequences.

Collection of commonly used RDP Tools for easy building

FLASH : Fast Length Adjustment of SHort reads

A robust and fast clustering method for amplicon-based studies.

TakeABreak docker for Galaxy

Mapsembler2 - targeted assembly software - Colib'read tool

Commet - Comparing and combining multiple metagenomic datasets - Colib'read tool

KisSplice - Local transcriptome assembler for SNPs, indels and AS events - Colib'read tool