Delly - Structural variant caller for Illumina paired-end sequencing data. Based on paired-end read mapping information (PEM) and split-read analysis. Pulled latest image build from dockerhub on December 12th, 2017)
GATK4 - Variant discovery pipeline for high throughput sequencing data. This new GATK version includes picard utilites within the release. Pulled latest image build, the oficial 4.1.1.0 release from dockerhub on April 10th, 2019
cnvkit - Copy number variation analysis from targeted DNA sequencing data. Pulled latest image build (v0.9.1) from dockerhub on November 28th, 2017