Duke Center for Genomic and Computational Biology

Community Organization

Duke Center for Genomic and Computational Biology

Durham, North Carolina

Displaying 1 to 25 of 41 repositories

dukegcb/calrissian

10K+

0

By dukegcb

Updated 3 years ago
CWL on Kubernetes
Data Science
Integration & Delivery
dukegcb/imads-worker

486

0

By dukegcb

Updated 4 years ago
iMADS API client that generates on-demand predictions using Docker and CWL
Data Science
Machine Learning & AI
dukegcb/imads

4.3K

0

By dukegcb

Updated 4 years ago
Web portal and supporting services that allow searching/creating TF predictions and preferences.
Data Science
Machine Learning & AI
Web Servers
dukegcb/imads-apache

3.7K

0

By dukegcb

Updated 4 years ago
Production apache setup for iMADS website.
Data Science
Web Servers
dukegcb/ddh

125

0

By dukegcb

Updated 4 years ago
Data Science
Machine Learning & AI
dukegcb/lando-util

287

0

By dukegcb

Updated 4 years ago
Data Science
Integration & Delivery
Monitoring & Observability
dukegcb/predict-tf-preference

238

0

By dukegcb

Updated 6 years ago
R Script for generating TF binding preferences from libsvm predictions
Data Science
Machine Learning & AI
dukegcb/predict-tf-binding

496

0

By dukegcb

Updated 6 years ago
Code for modeling and predicting TF-DNA binding using libsvm
Data Science
Machine Learning & AI
dukegcb/picard

2.2K

0

By dukegcb

Updated 6 years ago
Picard, based on broadinstitute/picard, customizing CMD
Data Science
Languages & Frameworks
dukegcb/mine

204

0

By dukegcb

Updated 6 years ago
Data Science
Databases & Storage
Machine Learning & AI
dukegcb/glimmer

247

0

By dukegcb

Updated 6 years ago
Data Science
Machine Learning & AI
dukegcb/makeblastdb-go

256

0

By dukegcb

Updated 6 years ago
Data Science
Databases & Storage
Languages & Frameworks
dukegcb/go-blast

219

0

By dukegcb

Updated 6 years ago
Data Science
Languages & Frameworks
dukegcb/seqtk

3.1K

0

By dukegcb

Updated 6 years ago
seqtk installed via apt
Data Science
Languages & Frameworks
dukegcb/extract-go-terms

223

0

By dukegcb

Updated 6 years ago
Data Science
Languages & Frameworks
Machine Learning & AI
dukegcb/genovo

219

0

By dukegcb

Updated 6 years ago
Data Science
Machine Learning & AI
dukegcb/gatk-base

186

0

By dukegcb

Updated 7 years ago
Dependencies (Java, R) for running GATK
Data Science
Machine Learning & AI
Security
dukegcb/trim-galore

2.2K

1

By dukegcb

Updated 7 years ago
Babraham Bioinformatics - Trim Galore!
Data Science
Machine Learning & AI
dukegcb/bwa-samtools

10K+

0

By dukegcb

Updated 7 years ago
BWA image with samtools for BAM output
Data Science
Machine Learning & AI
dukegcb/bwa

218

0

By dukegcb

Updated 7 years ago
BWA: Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
Data Science
dukegcb/test

0

0

By dukegcb

Updated 7 years ago
dukegcb/seekdeep

165

0

By dukegcb

Updated 7 years ago
SeekDeep ubuntu-based image
Data Science
Machine Learning & AI
dukegcb/spp

792

0

By dukegcb

Updated 7 years ago
Docker image for SPP
Data Science
Machine Learning & AI
dukegcb/samtools

88

0

By dukegcb

Updated 7 years ago
Tools (written in C using htslib) for manipulating next-generation sequencing data
Data Science
Integration & Delivery